338
23
Regulatory Networks
Schuster S, Kholodenko BN, Westerhoff HV (2000) cellular information transfer regarded from a
stoichiometry and control analysis perspective. Biosystems 55:73–81
Shlomi T, Cabili MN, Herrgård MJ, Palsson BØ, Ruppin E (2008) Network-based prediction of
human tissue-specific metabolism. Nat Biotechnol 26:1003–1010
Stanton BC, Nielsen AAK, Tamsir A, Clancy K, Peterson T, Voigt CA (2014) Genomic mining of
prokaryotic repressors for orthogonal logic gates. Nat Chem Biol 10:99–105
Theorell A, Stelling J (2022) Metabolic networks, microbial consortia, and analogies to smart grids.
Proc IEEE 110:541–556
Tkemaladze N (2002) On the problems of an automated system of pattern recognition with learning.
J Biol Phys Chem 2:80–84
Tomkins GM (1975) The metabolic code. Science 189:760–763
Vohradský J (2001) Neural network model of gene expression. FASEB J 15:846–854
Voigt CC, Matt F (2004) Nitrogen stress causes unpredictable enrichments of 15N in two nectar-
feeding bat species. J Exp Biol 207:1741–1748
Vu TT, Vohradský J (2007) Nonlinear differential equation model for quantification of transcrip-
tional regulation applied to microarray data of Saccharomyces cerevisiae. Nucleic Acids Res
35:279–287
Wagner A, Fell DA (2001) The small world inside large metabolic networks. Proc R Soc Lond B
268:1803–1810
Wang B, Kitney RI, Joly N, Buck M (2011) Engineering modular and orthogonal genetic logic
gates for robust digital-like synthetic biology. Nat Commun 2:508
Wilson CJ et al (2018) Biomolecular assemblies: moving from observation to predictive design.
Chem Rev 118:11590–11574
Wolkenhauer O, Ullah M, Wellstead P, Cho K-H (2005) The dynamic systems approach to control
and regulation of intracellular networks. FEBS Lett 579:1846–1853
Yahyanejad F, Albert R, DasGupta B (2019) A survey of some tensor analysis techniques for
biological systems. Quant Biol 7:266–277
Zhang Z, Luo Y, Hu S, Li X, Wang L, Zhao B (2020) A novel method to protect essential proteins
based on tensor and HITS algorithm. Hum Genomics 14:14